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Bioinformatics


Upland allotetraploid cotton (right) comes from two extant diploid species, closely related to today's G. raimondii (left) and G. arboreum (middle) or G. herbacieum.
A University of Texas at Austin scientist, working with an international research team, has developed the most precise sequence map yet of U.S. cotton and will soon create an even more detailed map for navigating the complex cotton genome. The finding may help lead to an inexpensive version of American cotton that rivals the quality of luxurious Egyptian cotton and helps develop crops that use less water and fewer pesticides for a cotton that is easier on the skin and easier on the land.

Molecular & Cell Biology

In results presented today at the American Association for Cancer Research (AACR) Annual Meeting 2015, a collaborative study by the University of Colorado Cancer Center and the National Cancer Institute (NCI) reports that the TERT gene promoter was altered in 69 percent of 54 cases of bladder cancer due to variants that occur after birth (called "somatic") and in 56 percent of bladder cancers due to inherited variants (called "germline"). The study shows these TERT alterations frequently co-occur with alterations in recently identified bladder cancer genes such as the stromal antigen 2 (STAG2), and the lysine-specific demethylase 6A (KDM6A).

Biology

Among soft-bodied cephalopods, vampire squid live life at a slower pace. At ocean depths from 500 to 3,000 meters, they don't swim so much as float, and they get by with little oxygen while consuming a low-calorie diet of zooplankton and detritus. Now, researchers reporting in the Cell Press journal Current Biology on April 20 have found that vampire squid differ from all other living coleoid cephalopods in their reproductive strategy as well.

Molecular & Cell Biology

Researchers from the University of Birmingham have identified an important new way in which our immune systems are regulated, and hope that understanding it will help tackle the debilitating effects of type 1 diabetes, rheumatoid arthritis and other serious diseases.

Health & Medicine

Poor quality medicines are a real and urgent threat that could undermine decades of successful efforts to combat HIV/AIDS, malaria and tuberculosis, according to the editors of a collection of journal articles published today. Scientists report up to 41 percent of specimens failed to meet quality standards in global studies of about 17,000 drug samples. Among the collection is an article describing the discovery of falsified and substandard malaria drugs that caused an estimated 122,350 deaths in African children in 2013. Other studies identified poor quality antibiotics, which may harm health and increase antimicrobial resistance. However, new methodologies are being developed to detect problem drugs at the point of purchase and show some promise, scientists say.

Biotechnology


Cacao seeds after harvest. A mixture of lipids called cocoa butter makes up about half of each seed.
The discovery of a gene involved in determining the melting point of cocoa butter -- a critical attribute of the substance widely used in foods and pharmaceuticals -- will likely lead to new and improved products, according to researchers in Penn State's College of Agricultural Sciences.

Biotechnology

Access to high-quality medicine is a basic human right, but over four billion people live in countries where many medications are substandard or fake. Marya Lieberman of the Department of Chemistry and Biochemistry at the University of Notre Dame and Abigail Weaver a postdoctoral associate in the University's Department of Civil Engineering and Environmental and Earth Sciences took up the challenge of how people in developing countries could detect low quality antimalarial drugs without expensive equipment and without handling dangerous chemicals.

Microbiology

The oceans and other water bodies contain billions of tons of dissolved uranium. Over the planet's history, some of this uranium was transformed into an insoluble form, causing it to precipitate and accumulate in sediments. There are two ways that uranium can go from a soluble to an insoluble form: either through the action of live organisms - bacteria - or by interacting chemically with certain minerals. Knowing which pathway was taken can provide valuable insight into the evolution and activity of microbial biology over Earth's history. Publishing in the journal PNAS, an international team of researchers led by the Ecole Polytechnique Fédérale de Lausanne in Switzerland describes a new method that uses the isotopic composition of uranium to distinguish between these alternative pathways.

Microbiology

A University of Colorado Boulder and North Carolina State University-led team has produced the first atlas of airborne microbes across the continental U.S., a feat that has implications for better understanding health and disease in humans, animals and crops.